This change is on a per Revit version basis.
For Clarity 2025, Refer to this blog post: https://imaginit.helprace.com/i659-clarity-2025-task-tray-configuration-for-error-overrides
There is a way to say “Continue Loading” for this kind of Schema Conflict dialog.
We are currently programmed to always hit “Do not load” for that specific issue, because there’s a risk of data loss. When we do that it kills the task.
IMPORTANT NOTE
Please be aware, this configuration change is at your own risk, and you understand that it will change the model during the task, and you are ok with that. For most tasks, we don't save the changes